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SRX11632748: Whole genome sequencing of oral isolates of Streptococcus species
1 ILLUMINA (Illumina HiSeq 4000) run: 2.4M spots, 726.1M bases, 322.7Mb downloads

Design: standard multiplex pooled library with size selection
Submitted by: Institute for Genome Sciences, University of Maryland, Baltimore
Study: Genome sequencing and assembly of Streptococcus genomes
show Abstracthide Abstract
Host colonization by streptococci is facilitated by glycan binding in both healthy dental plaque and infective endocarditis. The variety of glycan binding specificity among different oral steptococcal species is currently unknown. In this study, streptococcal strains were isolated from the oral cavity of humans, chimpanzees, and gorillas. Isolates were tested for binding to sialoglycans via hemagglutination and sialoglycan microarray. Many unique glycan binding profiles were observed. Glycan binding profiles did not correlate with bacterial species or host species. Genome sequencing revealed that glycan binding profiles correlate with the predicted amino acid sequence of serine-rich repeat proteins, adhesins known to bind sialoglycans.
Sample: Whole genome sequencing of oral isolate Streptococcus infantis STn450
SAMN20399924 • SRS9666426 • All experiments • All runs
Library:
Name: Sinfantis_STn450
Instrument: Illumina HiSeq 4000
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: PAIRED
Runs: 1 run, 2.4M spots, 726.1M bases, 322.7Mb
Run# of Spots# of BasesSizePublished
SRR153284602,404,243726.1M322.7Mb2022-08-01

ID:
15548125

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